FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924551

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924551
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences518213
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13420.25896687269520446No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12090.23330175043852625No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9760.1883395437783305No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8600.16595492587025026No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8310.1603587713932302No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8170.15765717957673775No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7620.14704378315480313No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7500.14472813302638105No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5290.10208157649460743No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)