FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924552

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924552
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences518213
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA20250.39076595917122886No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15160.2925437995573249No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13290.25645825172274717No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9550.18428715605359186No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9370.18081368086095873No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9170.17695426398025524No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8290.15997282970515986No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8250.15920094632901916No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8010.15456964607217497No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6690.12909749465953188No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5530.10671287675145162No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5480.10574802253127576No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5480.10574802253127576No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5390.10401128493495918No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5340.1030464307147833No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)