FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007924554

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924554
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences503838
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40000.7939059777150592No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA19460.38623525815837634No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14050.2788594746724145No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13540.2687371734565475No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8570.17009435572545142No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8300.1647354903758748No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7660.15203299473243384No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7630.15143756524914753No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7490.14865889432714485No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5970.11849046717397257No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5370.1065818775082467No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5350.10618492451938918No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5210.10340625359738645No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)