FastQCFastQC Report
Wed 31 May 2023
EGAF00007924556

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924556
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences446654
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT49911.1174197477241892No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC25470.5702400515835524No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15300.34254702745301735No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA15290.3423231405069696No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13690.3065012291393338No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12350.2765003783689388No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC10180.22791691107658277No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8840.1979160603061878No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA8280.18537839132751527No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8180.18313952186703802No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7570.16948241815812687No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC7380.1652285661832201No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA7210.1614224881004088No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT7020.15716863612550205No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6830.15291478415059534No Hit
GTTGCAGGTGGCGCAGATATCGATTACGCAA6390.14306375852449546No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC6320.1414965499021614No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6320.1414965499021614No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6280.14060100211797052No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5700.12761555924720253No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA5610.12560057673277303No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5070.11351068164619593No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5010.1121673599699096No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG4930.11037626440152781No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA4830.10813739494105055No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA4740.10612241242662106No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC4560.10209244739776202No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4520.10119689961357113No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)