FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924558

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924558
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences424884
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT46931.1045367676824733No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG35720.8407000498959717No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24140.5681550729140189No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14900.35068395138437786No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14720.3464475009649693No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13080.3078487304770243No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11680.2748985605482908No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9540.22453187222865537No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA8470.19934852806883763No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7810.18381487653100612No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA7030.16545692471356888No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6990.16451549128703363No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC6780.15957296579772362No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6360.14968791481910357No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC6190.1456868227563288No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT6170.14521610604306118No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5920.1393321471272159No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5740.13509569670780733No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5610.13203603807156777No Hit
GTTGCAGGTGGCGCAGATATCGATTACGCAA5390.12685815422562394No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA5380.12662279586899014No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5220.12285706216284915No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC4560.10732341062501766No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4400.10355767691887668No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC4390.10332231856224286No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG4360.10261624349234143No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA4310.10143945170917239No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)