FastQCFastQC Report
Sun 21 May 2023
EGAF00007924560

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924560
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences429040
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT51281.1952265523028156No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG35960.838150289017341No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC25310.589921685623718No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA15060.3510162222636584No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14650.341460003729256No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12800.2983404810740257No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12450.29018273354465784No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9380.2186276337870595No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA8240.19205668469140408No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8080.18832742867797875No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7680.17900428864441542No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA7250.16898191310833488No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC6670.1554633600596681No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6450.15033563304120828No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT6300.14683945552862204No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC6220.14497482752190938No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6120.14264404251351856No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5890.13728323699421965No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5650.13168935297408169No Hit
GTTGCAGGTGGCGCAGATATCGATTACGCAA5000.1165392504195413No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA4930.11490770091366771No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA4880.11374230840947232No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG4780.11141152340108149No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG4600.107216110385978No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC4530.10558456088010443No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC4450.10371993287339176No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4350.10138914786500092No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)