FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007924563

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924563
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences478822
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT26460.5526061876856118No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT14300.29864960256629813No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG13430.28048001136121564No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC13230.2763030938428059No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11580.24184352431592532No Hit
CAGCTGCTGCAGCGGGGTAGTTTCGCCCGGATAGATAGAACCAC9480.19798589037262282No Hit
GGTCTCACCCGGGTAGAAAGAACCACCTTTCGGCGGTACAACCA9310.19443551048197452No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9260.19339128110237208No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT9120.19046743883948525No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG8710.1819047579267452No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7990.16686785486047007No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG7900.16498824197718567No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG7850.16394401259758323No Hit
GGTTTCGCCCGGGTAGAAGCTACCACCTTTTGGCGGAACAACGG7640.15955824920325298No Hit
GGACACCTGCTGTGGAGAAGTAACGCTCGGGTAATAACGTTTCA7600.15872286569957103No Hit
CAGGGCTGGGATGCCCCAGAAAATCATCTGCTGCAGCTGCTGAG7510.15684325281628664No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7390.15433710230524078No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7210.150577876538672No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT7070.14765403427578516No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTTTTT7000.14619211314434175No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC6780.14159750387409098No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG6290.1313640559539871No Hit
GGTCTCGCCCGGGTAGAAAGAGCCACCTTTCGGTGGAACTACGG6280.13115521007806658No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6250.1305286724503051No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC6120.12781367606333877No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5990.12509867967637245No Hit
CAGTTGCTGCAGCGGAGTGGTTTCACCCGGGTAGATGGAACCGC5890.12301022091716755No Hit
GGCACCAACGAACGCACGCACAGCGGATGCGGTTACGTCCTGCG5710.11925099515059875No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5660.11820676577099633No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG5280.11027062248601778No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5110.10672024259536948No Hit
TTGCTGCAGCTGTTGCGGCGGGGTGGTTTCGCCCGGGTAGAAGG5090.10630255084352849No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG4890.10212563332511874No Hit
GTAATAGCTACCCTGGTGCGGGGAGGTGACAGACGGGTAATAAC4800.10024602044183432No Hit
GGTACGCTCGACGTGGCAACGTGCCAGCAGCAGACGCAGACCTT4790.10003717456591385No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)