FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924564

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924564
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences478822
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39970.8347569660541914No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT26170.5465496572839177No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22440.46865014556557555No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA14630.30554151647167427No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC14310.29885844844221865No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG11920.24894428409722194No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9930.20738395478904478No Hit
CTGCAGGAACACTCCCTGAAGGCGTGTCGTC9850.20571318778168085No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA9240.19297358935053108No Hit
TCCACCGGCCTGCAGATGCGTTGTTGCCAGC9210.1923470517227696No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8870.18524629194147305No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8370.17480399814544864No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC8080.16874746774375446No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG8050.168120930115993No Hit
GCAGGTCAATACGAACAGCAGATTGTTGTAC7970.1664501631086291No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7820.16331747496982177No Hit
CTGCAAGAGCGCGAACTGGAAGCATGTCGTC7510.15684325281628664No Hit
CGCGACGTGAGCCCGGGTTGCCGTCCGATCA7500.15663440694036615No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC7420.15496363993300225No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC7380.1541282564293203No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7370.1539194105533998No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6690.1397178909908066No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6420.1340790523409534No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6390.13345251471319194No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC6360.13282597708543048No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6340.1324082853335895No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6100.12739598431149782No Hit
CTGCAGGAACGTGAACTGGAAGCCTGCCGTC6070.12676944668373635No Hit
ATGATGGCTCGTCGCACCGTTGATTTCAAAA5780.12071291628204218No Hit
TCTACCGGCCTGCAGATGCGTTGCTGTCAGC5710.11925099515059875No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5440.11361215650074559No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG5370.11215023536930216No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG5180.10818216372681289No Hit
GATGTCCAGTCTGGTGCGATCGTTGAACCGG5140.10734678022313095No Hit
TGCCAGCAGGTAATGGACCAGCAGCTGCGTG5110.10672024259536948No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5110.10672024259536948No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5100.10651139671944898No Hit
CAACACGAACAGCAGACCGTGGTTCCGCCAA5060.10567601321576703No Hit
GTCGCCGGTCAGTACGAACAGCAGATCGTGG4810.10045486631775483No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)