FastQCFastQC Report
Sun 21 May 2023
EGAF00007924566

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924566
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485342
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40430.8330208389135908No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT27500.5666107610715743No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23230.4786315628979153No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA15450.3183322275838481No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC13550.27918457500072114No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG12150.25033893625525916No Hit
CTGCAGGAACACTCCCTGAAGGCGTGTCGTC10530.21696041142122463No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10200.21016108228836572No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA9560.19697450457615454No Hit
TCCACCGGCCTGCAGATGCGTTGTTGCCAGC8950.18440604769420327No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8770.18069732271264385No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8380.17266175191926517No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG8330.17163155053549867No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8330.17163155053549867No Hit
GCAGGTCAATACGAACAGCAGATTGTTGTAC8110.1670986644469261No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7910.1629778589118601No Hit
CGCGACGTGAGCCCGGGTTGCCGTCCGATCA7760.1598872547605606No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC7580.1561785297790012No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC7460.15370604645796163No Hit
CTGCAAGAGCGCGAACTGGAAGCATGTCGTC7360.1516456436904286No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7280.1499973214764022No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6960.14340403262029663No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6910.1423738312365301No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6350.1308355757383453No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC6280.12939329380107223No Hit
ATGATGGCTCGTCGCACCGTTGATTTCAAAA6270.12918725352431892No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6090.12547852854275954No Hit
TCTACCGGCCTGCAGATGCGTTGCTGTCAGC6090.12547852854275954No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6080.12527248826600623No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6010.12383020632873315No Hit
CTGCAGGAACGTGAACTGGAAGCCTGCCGTC5760.11867919940990064No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5740.11826711885639404No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG5690.11723691747262754No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG5270.10858322584898895No Hit
GTCGCCGGTCAGTACGAACAGCAGATCGTGG5190.10693490363496257No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5150.10611074252794936No Hit
GAACAGGGTCCGGCAGACGATCCGGGTGAAG5130.10569866197444276No Hit
CAACACGAACAGCAGACCGTGGTTCCGCCAA5070.10446242031392297No Hit
CCGGAATGCCACCCAGTAGTCGTTTCTCCGG5020.10343221893015647No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)