FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924567

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924567
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480337
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT35000.7286550900721784No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC28630.596039863679042No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA26140.5442012586996213No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA22920.4771649904129809No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA21180.440940423077964No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA18700.3893100052671354No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17500.3643275450360892No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT15870.33039303655558494No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA15840.3297684750498088No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG14400.29978952277255344No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC14390.2995813356039614No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT14310.297915838255225No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG12140.2527392226707499No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11660.24274623857833147No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA11580.24108074122959505No Hit
CGGCGCGGTCTGCAGACGGGATTTTGCAGAGGACGGGCTTTTCG11010.22921407261984814No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT10980.228589511114072No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG10580.22026202437038997No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG10560.21984565003320583No Hit
GGCAATGCCGGCGCGCCAACGACCATCACGCGCTTTGTCAGTGA10520.21901290135883764No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10420.21693102967291714No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC10170.2117263504581159No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT10080.20985266594078741No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC9840.20485617389457816No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT9610.200067869016961No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA8280.17237897559421822No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8200.1707134782454818No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC8080.16821523222237722No Hit
ACCCTCACCGGAACGAGCCGGACGAGAACCTTCACGGTGACGGC7970.16592517336786466No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC7950.16550879903068055No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG7950.16550879903068055No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG7060.146980141025988No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT7000.1457310180144357No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC6950.14469008217147544No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG6610.13761171843934572No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC6150.12803510868411136No Hit
TTCAGAAGAACCCAGACGGTCTGCGTTGGAAATGTCGAACACGC6090.12678598567255905No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT6030.12553686266100675No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA6020.1253286754924147No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA5960.12407955248086239No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5960.12407955248086239No Hit
GTGACGACGGCGGCGTTCACCGCCGTCCGGACCTTCGCCTTCAC5890.12262224230071804No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5860.12199768079494187No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTTTTT5790.12054037061479753No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5770.12012399627761342No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5370.11179650953393137No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG5060.1053427073075778No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG4920.10242808694728908No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG4910.10221989977869704No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT4900.10201171261010498No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG4830.10055440242996064No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)