FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924571

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924571
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464128
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT32190.6935586734693877No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC28060.6045746001103144No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA25440.5481246552675124No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA23260.5011548538334253No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA19950.4298383204633205No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA17710.3815757722007722No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17530.3776975317153889No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT15800.34042333149476006No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA15480.33352868174296746No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT14210.3061655405405405No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG13200.28440430226144514No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC12620.271907749586321No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG11850.25531749862107006No Hit
CGGCGCGGTCTGCAGACGGGATTTTGCAGAGGACGGGCTTTTCG11320.24389823496966356No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11180.24088182570325428No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA11050.23808087424158852No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT10650.22946256205184776No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG10490.22601523717595148No Hit
GGCAATGCCGGCGCGCCAACGACCATCACGCGCTTTGTCAGTGA10210.21998241864313292No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10210.21998241864313292No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT9960.21459597352454493No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT9850.21222593767236622No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG9620.2072704081632653No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC9570.20619311913954771No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC9170.19757480694980695No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC8240.17753723110865968No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC8080.17408990623276338No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7530.16223972697186984No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC7480.16116243794815222No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7410.1596542333149476No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG7320.1577151130722559No Hit
ACCCTCACCGGAACGAGCCGGACGAGAACCTTCACGGTGACGGC7220.15556053502482076No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6820.14694222283508No Hit
TTCAGAAGAACCCAGACGGTCTGCGTTGGAAATGTCGAACACGC6540.14090940430226143No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6290.13552295918367346No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC6270.13509204357418642No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG6170.13293746552675126No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA6140.1322910921125207No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA5990.1290592250413679No Hit
GTGACGACGGCGGCGTTCACCGCCGTCCGGACCTTCGCCTTCAC5850.12604281577495863No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT5720.1232418643132929No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5500.11850179260893548No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG5450.11742450358521786No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTTTTT5320.11462355212355213No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5300.1141926365140651No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA5180.11160714285714285No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT4790.10320428847214562No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG4770.10277337286265859No Hit
ACCTTCCTGCACACGCCAACGCTGCCAGGCCTCGAACAGGTGGG4720.10169608383894099No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)