FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007924574

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924574
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474031
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT40120.8463581495724962No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39500.8332788361942574No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA27370.5773883986490336No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24130.5090384384143654No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG24130.5090384384143654No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16200.341749801173341No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC14750.3111610844016531No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14440.30462142771253353No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA13860.2923859410038584No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC13720.28943254766038506No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13030.2748765376104094No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12910.272345057601718No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG12730.2685478375886809No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC11840.24977269419088627No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11800.24892886752132243No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT10380.21897302075180738No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9880.20842518738225982No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9660.20378414069965886No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC9490.2001978773540127No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9010.19007195731924706No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8850.18669665064099183No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7730.1630695038932053No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT7260.15315454052583058No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6780.14302862049106493No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6350.13395748379325403No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5770.12172199708457886No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC5300.11180703371720414No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT5250.1107522503802494No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5240.11054129371285844No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5140.10843172703894892No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4900.10336876702156608No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG4810.10147015701504755No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)