FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007924584

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924584
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences489533
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18560.379136850835388No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17340.354215139735217No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16520.33746448145477426No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15460.31581119148249454No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12230.24982993996318942No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10560.2157157944408242No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9770.19957796512186105No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8990.18364441212339108No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA8460.1728177671372512No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8170.16689375384294827No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG8030.16403388535604344No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG7410.15136875348546472No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7220.14748750339609382No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7130.145649016511655No Hit
CTGTCCTCCATGGCTATCACCTTCAAACGCG7040.14381052962721613No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6670.13625230576896757No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG6490.1325753320000899No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5830.11909309484753837No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC5830.11909309484753837No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5480.11194342363027619No Hit

[OK]Adapter Content

Adapter graph