FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924585

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924585
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470921
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17820.3784074186540842No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT14900.31640126475565966No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12550.2664990518579549No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11940.2535457114887635No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9740.2068287462228272No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8590.18240851437926955No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8170.1734898210103181No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT7630.16202292953595188No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC7310.15522773458817934No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7200.15289188632488251No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6790.14418554279804893No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6650.14121264500839842No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6340.1346297999027438No Hit
AACCAGTTCCGGAGTCGGCGGACGCGGCGGGCGCTGCAGGATTT5880.12486170716532073No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGTTAC5770.12252585890202392No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5570.11827886205966606No Hit
GCTGACAACCAGCTCGTCTTCGCCGTTCGGCGGTGGAGGCGGAA5460.11594301379636925No Hit
ACGGCGGAAGGCATACGGGTTGTCTTCGTCTGGCGCATCAATAT5350.11360716553307243No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5030.10681197058529987No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT4760.10107852484811676No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)