FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007924586

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924586
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470921
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38910.8262532356807193No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17460.3707628243378401No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16670.3539871868105266No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15910.3378485988095668No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15360.3261693574930827No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11930.2533333616466456No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10480.2225426345395512No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9700.20597934685435562No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA8550.181559115010798No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG7490.1590500317463014No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG7400.15713888316724037No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7310.15522773458817934No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6840.1452472920086384No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6690.14206204437687No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6690.14206204437687No Hit
CTGTCCTCCATGGCTATCACCTTCAAACGCG6640.14100029516628054No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG5960.12656050590226386No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5570.11827886205966606No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC5430.11530596427001556No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4950.10511317184835672No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4850.10298967342717781No Hit

[OK]Adapter Content

Adapter graph