FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924587

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924587
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences533580
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10410.19509726751377487No Hit
GGAAAAGCCGAAGCGACGCAGCGCACGAGTGTCTGCGGTTACAC8310.15574047003260993No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG7470.13999775104014395No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7170.1343753513999775No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG7130.133625698114622No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6570.12313055211964467No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6420.12031935229956145No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT6070.11375988605270063No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5600.10495145994977323No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)