FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007924588

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924588
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences533580
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41700.7815135499831328No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA14460.27099966265602154No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11920.2233966790359459No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10320.19341054762172494No Hit
GAAGAGCTGTCCAACGAAGTTCTGCCACCGC7970.14936841710708798No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7590.1422467108962105No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA7570.14187188425353273No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG7290.13662431125604407No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA7000.13118932493721655No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG6850.1283781251171333No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6550.1227557254769669No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT6540.12256831215562802No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5960.11169833951797295No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5470.10251508677236777No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACG5390.10101578020165673No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)