FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924589

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924589
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences542063
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT16700.3080822708799531No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12710.23447459059186848No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9280.17119781280035715No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8730.16105139070550842No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8620.15902210628653865No Hit
ATAACGCAGGTAAGAGTACACTTCGCGTTCTTCTTCGGTATAAC8240.15201185102100678No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8110.14961360579858798No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7850.1448171153537504No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7790.14371023294340327No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7440.13725341888304496No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7280.1343017324554526No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG6530.1204657023261134No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6260.11548473147955127No Hit
GTCTACAACGCGGAAAGTCGCATCCGGAGCAATCATTTTAACGT6250.11530025107782675No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5610.10349350536745729No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)