FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924590

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924590
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences542063
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17740.32726823265930344No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG17080.31509252614548494No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16810.3101115552989228No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12200.2250660901039178No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9770.18023735248485878No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9540.17599430324519474No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9100.16787716556931576No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8850.1632651555262027No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8310.15330321383307843No Hit
ACTCTGACCGGTAAAGTTGAGGATAACCACG8270.15256529222618034No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8230.15182737061928225No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7790.14371023294340327No Hit
AACGCATTCCGTCTGAAGAGCCTGGCTAAAT6410.11825193750541912No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6270.1156692118812758No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6180.11400888826575509No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG6010.1108727214364382No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5720.10552278978642703No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC5620.1036779857691818No Hit
TACGACGGCAGCGCCATTAAAGAAGTACAGT5580.10294006416228373No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)