FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924594

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924594
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences578399
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGAACAGAAACAGCTGCTGCAGGGTGACG23710.4099246367991646No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG21480.371369936670015No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21050.36393562229533594No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG20270.350450121801732No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG19600.3388664226597902No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC18680.3229604477186164No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG15430.26677086232860014No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14930.25812631073013614No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG13670.23634204070200676No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC12410.21455777067387738No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC12350.21352042448206168No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG12160.21023549487464538No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10940.1891427889743931No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG10780.18637653246288463No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG9970.17237235887337288No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG9910.17133501268155718No Hit
AAAGAAGACATCCGTGACAACATTGTCTCCT9700.16770430101020228No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC9220.15940553147567682No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9080.1569850570281069No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT8520.14730315923782716No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG8250.1426351013746566No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG8070.13952306279920956No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7400.12793936365726774No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7380.12759358159332918No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG7100.12275263269818933No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG7090.12257974166622002No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG7060.1220610685703122No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG7010.12119661341046578No Hit
ATGTCCAACATGGACATCGATGGTATTAACA6800.11756590173911088No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC6670.11531831832351024No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)