FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924596

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924596
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences550217
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43860.797140037476123No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG21590.39239063860258766No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20390.37058106165385657No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG19670.3574953154846179No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG19340.3514976818237168No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC18070.32841587955297635No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG17430.3167841051803198No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG15330.2786173455200403No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13660.24826568426638945No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC12790.23245374097855936No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG12090.2197314877584662No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC11750.2135521076229924No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG11270.20482827684349994No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG10470.19028855887767918No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10180.18501791111506916No Hit
AAAGAAGACATCCGTGACAACATTGTCTCCT9800.17811154508130428No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG9060.16466230596292009No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG8860.1610273764714649No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC8600.15630196813257313No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT7900.14357971491247998No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG7560.13740033477700617No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG7550.1372185883024334No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG7220.13122095464153233No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7060.12831301104836818No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG6620.12031616616716677No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6610.12013441969259402No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG6600.11995267321802125No Hit
ATGTCCAACATGGACATCGATGGTATTAACA6450.11722647609942985No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG6410.11649949020113883No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC5840.10613994115049154No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5540.10068754691330876No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)