FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924598

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924598
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences575810
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGAACAGAAACAGCTGCTGCAGGGTGACG23750.4124624442090273No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG21110.36661398725273964No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21070.3659193136624928No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG20310.352720515447804No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG18990.3297962869696601No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC18820.3268439242111113No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG15960.27717476250846634No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15540.2698806898108751No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG13350.23184731074486373No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC13320.23132630555217867No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC12250.21274378701307722No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG12130.21065976624233687No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG11340.19693996283496296No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10430.1811361386568486No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG10300.17887844948854656No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG9640.16741633524947466No Hit
AAAGAAGACATCCGTGACAACATTGTCTCCT9590.16654799326166617No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9490.16481130928604923No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC9350.16237995172018546No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT8780.15248085305916884No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG8320.1444921067713308No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG8280.14379743318108404No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7520.13059863496639518No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7450.1293829561834633No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG7140.12399923585905072No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG7080.12295722547368056No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG6840.11878918393219985No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG6780.11774717354682968No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC6640.11531581598096595No Hit
ATGTCCAACATGGACATCGATGGTATTAACA6510.1130581268126639No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)