FastQCFastQC Report
Sun 21 May 2023
EGAF00007924599

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924599
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences557833
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA33300.5969528514806403No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA30320.5435318455523427No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC20460.3667764366754925No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT20160.36139848305854977No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA16630.2981178954991906No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA15230.27302077862012464No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGGTGG15170.2719451878967361No Hit
CAGGCCGGTGCGCAGGTTGGTGAATTTAGCAATCGGCAGGCCAC14570.26118928066285074No Hit
TTCGTCACCGGTGCTCGGCAGCTTACGCTTGTTGTTAGTGGATT13510.24218717788298647No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA12660.22694964263498216No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT12050.21601447028053197No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT11700.2097401910607655No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA11530.2066926840111646No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC11310.20274885135873996No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10980.196833102380103No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA10820.1939648604510669No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG9940.1781895298413683No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC9560.17137745525990755No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA8920.1599044875437631No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC8120.14556327789858256No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG8110.1453840127780178No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7430.13319398457961432No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC7160.1283538263243659No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG7120.12763676584210687No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7010.12566484951589454No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG6680.11974910053725756No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT6650.1192113051755633No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC6610.11849424469330427No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC6400.11472967716144437No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6120.10971025378563118No Hit
AATCAGACGCGCGGTGGTTACGTTCGTAGATTTCGCCAGCTTTG5760.10325670944529994No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC5710.10236038384247616No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC5600.10038846751626383No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)