FastQCFastQC Report
Sun 21 May 2023
EGAF00007924600

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924600
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences557833
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT68841.234061089967786No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG48000.8604725787108328No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC28890.5178969333115825No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG19920.35709612016499565No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA17150.307439681768558No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG16720.2997312815842734No Hit
GAACGTACCACTGACGGTAAACTGGATCCGC15680.28108770904553876No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG15320.2746341647052075No Hit
TCCCAGGAAATCACCTTCGTTTACGAGAAAA13920.2495370478261415No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG13180.2362714289043495No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC12940.23196906601079537No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC12810.22963861944345348No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC12690.22748743799667642No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12650.2267703775144174No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11360.20364517696156376No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11030.19772942798292678No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9250.16582023652240008No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG8730.15649845025303272No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA8500.1523753524800433No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT7610.13642075674977994No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7550.1353451660263914No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC7470.13391104506187337No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG7440.13337324970017908No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG7370.13211839385622579No Hit
ACTCCGTCTGACGCAGGCGAAACGGTCGCGG7360.13193912873566105No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7360.13193912873566105No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7080.12691970535984784No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6820.12225881222516417No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6180.11078584450901974No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6000.1075590723388541No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5920.10612495137433606No Hit
GTTGAAACCCCGCAGCCGACCGCTGTATCCG5640.10110552799852286No Hit
GCTGGTCACCTGATCGGTAAAGGCGCGAAAG5590.10020920239569907No Hit
GTGGGTACCTTCGAAAAAGTCTTTAACGACG5590.10020920239569907No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC5580.1000299372751343No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)