FastQCFastQC Report
Wed 31 May 2023
EGAF00007924602

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924602
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences563095
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT74281.3191379784938597No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46820.831476038679086No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC29800.5292179827560182No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG20720.36796632894982195No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG16830.2988838473081807No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA16340.2901819408803133No Hit
GAACGTACCACTGACGGTAAACTGGATCCGC16150.2868077322654259No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG15380.27313330787877715No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG13480.2393912217299035No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13350.23708255267761214No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC13170.2338859339898241No Hit
TCCCAGGAAATCACCTTCGTTTACGAGAAAA12960.23015654552073805No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC12570.223230538363864No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC12530.22252017865546664No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11340.2013869773306458No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10870.19304025075697706No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA9570.16995356023406352No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9160.16267237322299077No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG8960.1591205746810041No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT8470.15041866825313668No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7760.1378097834290839No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7670.13621147408518988No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7530.1337252151057992No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG7360.1307061863451105No Hit
ACTCCGTCTGACGCAGGCGAAACGGTCGCGG7330.1301734165638125No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC7300.1296406467825145No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG7300.1296406467825145No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6500.11543345261456771No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC6340.11259201378097834No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5890.10460046706150827No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5820.10335733757181292No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)