FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924603

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924603
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences596218
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT20590.34534348174660945No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19570.32823564535119704No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG12950.2172024326672459No Hit
TGGACGACCGCCGCCGCGACCACGACCGCGGCCACGACCGCGAC12720.21334478328396658No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG11820.1982496335233086No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG11490.192714745277734No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA11280.18919254366691377No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG9340.15665410973838428No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9170.1538028036724822No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG9110.15279646035510502No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9090.15246101258264594No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8870.14877108708559622No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8270.13870765391182419No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8240.13820448225313559No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8100.13585634784592213No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGTTAC7960.13350821343870867No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT7900.13250187012133147No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC7870.13199869846264287No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7760.13015373571411798No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG7680.12881194462428172No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT7620.12780560130690452No Hit
TGGGCGGCCGCCACCACGACCGCGACCGCGGCCACGACCACGGC7130.11958713088165737No Hit
CGGGCGACCGCCACCACGACCACGACCACGACCGCGGCCACGGC7070.11858078756428019No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG7070.11858078756428019No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA7040.11807761590559157No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG6910.11589720538460763No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA6710.11254272766001697No Hit
GGCTGGAATGGATTCGGAGTTGCGCGGGCCGGTCGGCAGGGTGT6680.11203955600132837No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6610.11086548879772164No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6480.1086850782767377No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC6430.10784645884559005No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6120.1026470183724745No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA6030.10113750339640869No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)