FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924604

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924604
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences596218
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCAGCGGTAATGTTAGCGTTGGTTATAACC21320.3575873254413654No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20000.335447772459067No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15420.25863023256594064No Hit
ATGTCTGACGAAGGCCCGGGTACCGGCCCGG14780.2478959038472505No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG13840.23212985854167437No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG13750.23062034356560857No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA13680.2294462763620018No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13160.22072463427806605No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12870.2158606415774096No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12800.21468657437380287No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12000.2012686634754402No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG11200.1878507525770775No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10180.1707429161816651No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9800.16436940850494283No Hit
ATGTCTGACGAAGGCCCGGGCACCGGTCCGG9610.1611826546665817No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9370.15715728139707288No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9010.15111922149280968No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG8710.14608750490592368No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8650.14508116158854648No Hit
ATGAGCGACGAAGGTCCGGGTACCGGCCCGG8540.14323619884002162No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG8190.13736586282198793No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8170.13703041504952887No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG7990.13401138509739727No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG7950.13334048955247912No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC7830.13132780291772472No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7480.12545746689969103No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGC7190.12059347419903457No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA7130.11958713088165737No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA7100.11908395922296877No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6940.11640037704329625No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA6580.11036231713903302No Hit
CTGCACGACGACGCTAACTTTCTGGAACATG6490.10885280216296724No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6210.1041565333485403No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6100.10231157060001544No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6100.10231157060001544No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5990.10046660785149057No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)