FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007924605

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924605
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences572481
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG28010.4892738798318198No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT24720.4318047236502172No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG23440.40944590300813477No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC21600.37730509833514125No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA20880.3647282617239699No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT17750.31005395812262765No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA17520.30603635753850345No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17200.30044665237798285No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC17160.29974793923291776No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG16440.2871711026217464No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG16320.2850749631865512No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG15600.2724981265753798No Hit
GGCAATGCCGGCGCGCCAACGACCATCACGCGCTTTGTCAGTGA15490.27057666542645087No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA14790.258349185387812No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC11670.20384956007273602No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA11410.19930792462981303No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG11100.1938928977555587No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT9300.16245080622763025No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8250.144109586169672No Hit
CAGACCCATTGGTTCGTTCATGATGTCGTTGTCCAGGCCCGGAC8100.14148941187567796No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC7590.13258081927609824No Hit
AGATTCAACATCCGTTTCGCTACCGTTGAAGTGCATGTAGGTGG7530.1315327495585006No Hit
TTTCAGGATAGACGGGCTTGCAACCGGCGGAGCGTTGGATACAG7510.1311833929859681No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG6250.1091739289164182No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA6160.10760182434002177No Hit
ACCTTCCTGCACACGCCAACGCTGCCAGGCCTCGAACAGGTGGG6000.10480697175976146No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)