FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007924606

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924606
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences572481
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA50000.8733914313313456No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT41810.7303299148792711No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC31320.5470923925859548No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG31240.5456949662958246No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG29570.5165236924893578No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA25160.4394905682459331No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA23190.4050789458514781No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC18480.3228054730200653No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG17960.3137222021342193No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG17650.3083071752599649No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17210.3006213306642491No Hit
CTGAAGGCGACCACCACCCACCTGTTCGAAG16120.2815813974612258No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT14730.2573011156702144No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA11150.19476628918689004No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA10200.17817185199159447No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9460.16524565880789058No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT9320.1628001628001628No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACG9200.16070402336496756No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8410.1469044387499323No Hit
CTGGAAGAGGTCATCGTAGAAAAAACCAAAC7600.13275549756236452No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG7560.13205678441729946No Hit
GTGCCGGTCAGCGGCTCTGCTCCGGGTCGCC7090.12384690496278479No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG6840.11947994780612807No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG6520.11389024264560745No Hit
AGCCAGCCGGATGCAGTACTGGCTGCGACTT6230.10882457234388564No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT6070.10602971976362535No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCTG5970.10428293690096266No Hit
GCTCAGGCAGTAGACATCCTGTCCGTTAGCG5850.10218679746576743No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)