FastQCFastQC Report
Sun 21 May 2023
EGAF00007924608

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924608
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences541086
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA46980.8682538450449652No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44290.8185390122827054No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT40730.7527454046122057No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC30020.5548101410866295No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG27810.5139663565496058No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG26930.4977027681366733No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA22790.4211899771940135No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA20790.38422727625553055No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG17070.3154766525099522No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC16830.3110411283973343No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG16130.2981041830688652No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15560.2875698133013976No Hit
CTGAAGGCGACCACCACCCACCTGTTCGAAG14430.2666858872711547No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT14230.26298961717730635No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA9760.18037798057979693No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA9610.17760577800941071No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT9210.1702132378217141No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACG8280.15302558188531953No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7780.1437849066506988No Hit
CTGGAAGAGGTCATCGTAGAAAAAACCAAAC7260.1341746044066932No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG7000.1293694532846904No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG6660.1230857941251483No Hit
GTGCCGGTCAGCGGCTCTGCTCCGGGTCGCC6210.11476918641398966No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG6020.11125772982483376No Hit
AGCCAGCCGGATGCAGTACTGGCTGCGACTT5780.1068222057122158No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCTG5610.10368037613244475No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)