FastQCFastQC Report
Sun 21 May 2023
EGAF00007924609

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924609
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences569022
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG28460.5001564087153045No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT24310.4272242549497207No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC22990.4040265578483785No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA21250.37344777530569995No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG20670.36325484779147377No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA18510.3252949798074591No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG18140.318792595013901No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17930.31510205229323296No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC17510.30772096685189676No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT16920.29735229920811496No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG16870.29647359856033684No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG15820.2780208849569964No Hit
GGCAATGCCGGCGCGCCAACGACCATCACGCGCTTTGTCAGTGA15340.26958535873832645No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA14420.2534172668192091No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA11570.20333132989585642No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC11320.19893782665696583No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG10780.18944785966096214No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT8950.15728741595228304No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8150.14322820558783317No Hit
CAGACCCATTGGTTCGTTCATGATGTCGTTGTCCAGGCCCGGAC8070.14182228455138818No Hit
TTTCAGGATAGACGGGCTTGCAACCGGCGGAGCGTTGGATACAG7560.13285953794405136No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC7440.13075065638938388No Hit
AGATTCAACATCCGTTTCGCTACCGTTGAAGTGCATGTAGGTGG7070.12424827159582583No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA6720.11809736706137901No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG6370.11194646252693218No Hit
ACCTTCCTGCACACGCCAACGCTGCCAGGCCTCGAACAGGTGGG6180.10860740006537534No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)