FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924610

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924610
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences569022
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA51250.9006681639725705No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT41200.7240493337691689No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC31440.5525269673228803No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG29890.5252872472417587No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG29410.5168517210230887No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA24700.43407812000239004No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA22670.3984028737025985No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG19360.3402328908196871No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC18880.33179736460101716No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17760.31211447009078735No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG17240.3029759833538949No Hit
CTGAAGGCGACCACCACCCACCTGTTCGAAG16030.2817114276776645No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT14310.2514841253940972No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA10740.18874489914273965No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA10560.18558157681073842No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10350.18189103409007032No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT9440.16589868230050858No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACG8950.15728741595228304No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8170.1435796858469444No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG7570.133035278073607No Hit
CTGGAAGAGGTCATCGTAGAAAAAACCAAAC7340.12899325509382764No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG7130.12530271237315957No Hit
GTGCCGGTCAGCGGCTCTGCTCCGGGTCGCC7060.1240725314662702No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG6850.1203819887456021No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCTG6200.10895888032448657No Hit
AGCCAGCCGGATGCAGTACTGGCTGCGACTT6180.10860740006537534No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT6150.10808017967670845No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)