FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924611

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924611
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences548480
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG26780.4882584597432906No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT23480.42809218203033844No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG22720.4142357059509918No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC21660.3949095682613769No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA20140.3671966161026838No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA17460.3183343057176196No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT17060.3110414235705951No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG16860.30739498249708286No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16440.29973745624270715No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC16060.29280921820303385No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG15370.28022899649941657No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG15290.2787704200700116No Hit
GGCAATGCCGGCGCGCCAACGACCATCACGCGCTTTGTCAGTGA14520.2647316219369895No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA13840.2523337222870478No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA11070.20183051341890315No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC10770.19636085180863477No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG10410.1897972578763127No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT8370.15260355892648775No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8200.14950408401400234No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC7580.13820011668611434No Hit
AGATTCAACATCCGTTTCGCTACCGTTGAAGTGCATGTAGGTGG7460.136012252042007No Hit
TTTCAGGATAGACGGGCTTGCAACCGGCGGAGCGTTGGATACAG7350.13400670945157525No Hit
CAGACCCATTGGTTCGTTCATGATGTCGTTGTCCAGGCCCGGAC7330.13364206534422404No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG6610.12051487747957992No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA6260.1141336056009335No Hit
ACCTTCCTGCACACGCCAACGCTGCCAGGCCTCGAACAGGTGGG5640.10282963827304552No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)