FastQCFastQC Report
Wed 31 May 2023
EGAF00007924615

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924615
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences547791
Sequences flagged as poor quality0
Sequence length44
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT24860.4538227170581481No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA17270.31526622379703206No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT15230.2780257433948349No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14800.2701760342904502No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG12040.21979185492277165No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT10990.20062396059811133No Hit
CGGAGACAGCTGAGAGTATGGGATGAAATGGTAGTGATCGCCGT10930.19952865235098788No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT10230.18675005613454768No Hit
TTCCAGTTCGGACATACGGTCGTACGGAATAAAGTGGAAGTGAT8690.1586371444583792No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG8520.15553377109152944No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA8150.14877937023426818No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7670.1400169042572806No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7530.13746118501399257No Hit
GTTCGGCAGGGTCGGCTGGCCGATCTGGTTGGATTTCGGGATGT7140.13034168140769015No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGTTAC5920.10807041371618008No Hit
AAATGCGGAAACTGGAGCCGGCAGAGAATACAGGTCACCGCAGA5910.1078878623416595No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5710.104236834851248No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5500.10040325598631594No Hit
ACCCGGAGACTGCGGCAGCGTATCACGGGTGCCGTCGCCACCCT5500.10040325598631594No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)