FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924616

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924616
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences547791
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT35640.6506130987913273No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT25070.45765629592308016No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16620.3034003844531947No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA15630.28532779837565786No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG12480.22782411540167694No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA11590.21157704306934577No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG11260.20555284771016685No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA10780.19679038173317925No Hit
ATCGAGAAAACCGATGAACTGGCAACCCTGC8900.16247072332331128No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT8820.16101031232714666No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8570.1564465279641323No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG8390.15316060322276198No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8210.14987467848139163No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7900.14421558587125383No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7760.14165986662796579No Hit
AGCCTGGGTTCCCTGAGCTCTAACCCAAGCT7420.13545311989426626No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG6240.11391205770083847No Hit
AACACTCTGAAACAGGTGGATATGCGTAACT6140.11208654395563271No Hit
CACGAAGCTCCGAACATGACCCAGACCGGTA6020.10989592746138582No Hit
ACTCGTCTGGAAAACATCAAAACCGACCGTA6010.10971337608686525No Hit
TCCCAGTCTTCCCAGAAATCCGAGAACCTGA5930.10825296509070065No Hit
GCTGCTTCTAGCGATGCACTGGAAGCCCTGG5810.10606234859645376No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5600.10222876973152169No Hit

[OK]Adapter Content

Adapter graph