FastQCFastQC Report
Sun 21 May 2023
EGAF00007924618

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924618
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences524495
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41760.7961944346466601No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT33670.6419508288925538No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT22990.4383263901467126No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16220.30924984985557535No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA14840.2829388268715622No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG12410.23660854726927807No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA11230.21411071602207837No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG9980.19027826766699396No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA9690.18474913964861436No Hit
ATCGAGAAAACCGATGAACTGGCAACCCTGC8140.1551969036883097No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG7880.15023975443045215No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT7860.14985843525677078No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7360.14032545591473705No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7290.1389908388068523No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7220.13765622169896757No Hit
AACACTCTGAAACAGGTGGATATGCGTAACT6350.12106883764382882No Hit
AGCCTGGGTTCCCTGAGCTCTAACCCAAGCT6300.12011553970962545No Hit
ACTCGTCTGGAAAACATCAAAACCGACCGTA5900.11248915623599844No Hit
TCCCAGTCTTCCCAGAAATCCGAGAACCTGA5850.11153585830179506No Hit
CACGAAGCTCCGAACATGACCCAGACCGGTA5820.11096387954127303No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG5770.11001058160706965No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5350.10200287895976129No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)