FastQCFastQC Report
Sun 21 May 2023
EGAF00007924619

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924619
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences531781
Sequences flagged as poor quality0
Sequence length44
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT23480.4415351432262529No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA16810.3161075705976708No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT15080.2835753815950551No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA13450.2529236659451917No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG12270.23073408038271395No Hit
CGGAGACAGCTGAGAGTATGGGATGAAATGGTAGTGATCGCCGT10980.20647597413220856No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT10850.20403135877363052No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT9600.18052544186422606No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG8440.15871195097229873No Hit
TTCCAGTTCGGACATACGGTCGTACGGAATAAAGTGGAAGTGAT8360.15720757229009688No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7760.14592473217358273No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA7650.14385621148555516No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7520.1414115961269771No Hit
GTTCGGCAGGGTCGGCTGGCCGATCTGGTTGGATTTCGGGATGT6540.12298295727000402No Hit
AAATGCGGAAACTGGAGCCGGCAGAGAATACAGGTCACCGCAGA6280.11809372655284787No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGTTAC5790.10887940712436134No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5470.10286189239555382No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5420.10192165571917763No Hit
TTCTTCCAGTGCGCTCAGTTTAGAGTATGGAATGAAATGATAGT5350.10060532437225099No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)