FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924620

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924620
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences531781
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41990.7896107608207139No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT36240.6814835430374534No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT23510.44209928523207864No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16490.31009005586886335No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA15320.28808851764166077No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG12500.23505916909404437No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA11960.22490461298918163No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA10610.19951822272702485No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG10430.1961333706920706No Hit
ATCGAGAAAACCGATGAACTGGCAACCCTGC8540.1605924243250511No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT8460.15908804564284923No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8310.1562673356137207No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG7580.1425398801386285No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7310.13746260208619712No Hit
AGCCTGGGTTCCCTGAGCTCTAACCCAAGCT6570.1235470992758297No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6540.12298295727000402No Hit
AACACTCTGAAACAGGTGGATATGCGTAACT6230.1171534898764717No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG5970.11226425915931558No Hit
CACGAAGCTCCGAACATGACCCAGACCGGTA5740.10793917044798516No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5630.10587064975995757No Hit
ACTCGTCTGGAAAACATCAAAACCGACCGTA5620.10568260242468233No Hit
GCTGCTTCTAGCGATGCACTGGAAGCCCTGG5510.10361408173665476No Hit
AAAGAGCTGTACGATTCCCCGTCTGCGCAGC5340.10041727703697576No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)