FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924625

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924625
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences527127
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA17670.3352133356857076No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA16080.305049826702104No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT14470.27450690251115956No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12630.2396007034357944No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10550.20014152187233816No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT10010.18989731127413317No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC9260.17566924099884848No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG8970.17016772049240506No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8670.16447649238229117No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8410.15954409468685915No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG8360.15859555666850683No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7850.14892046888131322No Hit
CGGACCAGGATCCGGACCGTCGTCGCCCATCTGATCCGGTTCCG7710.14626456242992675No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG6940.13165707694730114No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6730.1276732172702214No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6410.12160257395276661No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5990.11363485459860716No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5910.11211719376924345No Hit
ACCCAGCGTGATAGAACGCACGCGGTCAGAGTAACCACATTCCT5630.10680538086647051No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5410.10263181358572034No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5380.10206269077470895No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)