FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924626

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924626
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences527127
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43770.8303501812656153No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT37410.709696145331201No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18000.34147368660683286No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14440.27393777970014815No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13400.25420818891842006No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10730.2035562587384065No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT10450.19824444583563355No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC10350.19634736979892892No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9940.18856935804843994No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9330.17699719422454172No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8680.16466619998596163No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8490.16106175551622284No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG7920.15024842210700648No Hit
CAGGCGCCGTACCCGTCTGAGGACTCCCCGA7680.14569543961891537No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7380.1400042115088015No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6750.12805263247756235No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6660.12634526404452817No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG6370.12084374353808475No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6190.11742900667201643No Hit
GATGCGGCCTCCAATTCTGCAAACCGTCAGG5920.11230690137291394No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5840.11078924054355023No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5650.10718479607381144No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5400.10244210598204986No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5370.10187298317103848No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5310.1007347375490157No Hit
GACGCCGCGTCCAGCAGCTCTGCAGGTCAGT5300.10054502994534524No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)