FastQCFastQC Report
Wed 31 May 2023
EGAF00007924627

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924627
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences549836
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA18290.33264464312995146No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA16580.30154446053004896No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT15240.2771735572061488No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12980.23607039189867526No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10770.19587658865552635No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT10080.1833273921678464No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC9820.17859870943335832No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG9040.164412661229894No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT9000.1636851715784343No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG8870.16132083021119023No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8480.1542278061094581No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8440.1535003164579984No Hit
CGGACCAGGATCCGGACCGTCGTCGCCCATCTGATCCGGTTCCG8260.1502266130264297No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7080.12876566830836833No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG6910.12567383728966455No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6900.12549196487679964No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6100.11094217184760546No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG5880.10694097876457707No Hit
ACCCAGCGTGATAGAACGCACGCGGTCAGAGTAACCACATTCCT5830.10603161670025243No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5760.10475850981019794No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5630.1023941684429539No Hit
ACCCAGGGTGATCTGCTGAACACGATCGGAGTAGCCGCACGCTT5630.1023941684429539No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG5580.10148480637862928No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5570.10130293396576433No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)