FastQCFastQC Report
Sun 21 May 2023
EGAF00007924628

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924628
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences549836
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT36690.6672898828014171No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18270.33228089830422164No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15060.27389985377458004No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA14260.25935006074538586No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC11270.20497020929877274No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10780.1960584610683913No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT10620.19314850246255247No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9900.18005368873627772No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9550.17368815428600526No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9270.16859572672578732No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9240.16805010948719254No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9210.16750449224859776No Hit
CAGGCGCCGTACCCGTCTGAGGACTCCCCGA8770.15950210608254098No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG8380.15240908198080882No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7750.14095111997031842No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7350.13367622345572136No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7010.12749256141831383No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6610.12021766490371674No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG6450.11730770629787791No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6190.11257902356338981No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6180.11239715115052488No Hit
GATGCGGCCTCCAATTCTGCAAACCGTCAGG6120.11130591667333532No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5900.10730472359030693No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5810.10566787187452258No Hit
GACGCCGCGTCCAGCAGCTCTGCAGGTCAGT5690.10348540292014347No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5670.1031216580944136No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5530.10057544431430464No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)