FastQCFastQC Report
Sun 21 May 2023
EGAF00007924629

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924629
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences533300
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA17120.3210200637539846No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA15360.2880180011250703No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT14340.2688918057378586No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC13010.2439527470466904No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10960.20551284455278454No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT10010.18769923120195012No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC9370.1756984811550722No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8590.1610725670354397No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG8520.15975998499906244No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8450.15844740296268517No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG8420.15788486780423774No Hit
CGGACCAGGATCCGGACCGTCGTCGCCCATCTGATCCGGTTCCG8210.15394712169510594No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7910.1483217701106319No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7230.13557097318582412No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6950.13032064504031501No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG6570.12319519969998126No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6350.11906994187136696No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5820.10913182073879618No Hit
ACCCAGCGTGATAGAACGCACGCGGTCAGAGTAACCACATTCCT5550.10406900431276955No Hit
ACCCAGGGTGATCTGCTGAACACGATCGGAGTAGCCGCACGCTT5470.10256891055690981No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)