FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924630

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924630
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences533300
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42940.8051753234577161No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT38480.7215450965685355No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18070.33883367710481904No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14990.281080067504219No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA14240.26701668854303395No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC10910.20457528595537222No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT10620.19913744609038067No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10590.19857491093193325No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10250.19219951246952935No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9070.17007312957059817No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8770.16444777798612414No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8660.16238514907181698No Hit
CAGGCGCCGTACCCGTCTGAGGACTCCCCGA8570.16069754359647478No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG7730.1449465591599475No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7280.13650853178323644No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7110.1333208325520345No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7010.1314457153572098No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG6610.12394524657791113No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6010.11269454340896307No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5880.11025689105569098No Hit
GATGCGGCCTCCAATTCTGCAAACCGTCAGG5780.10838177386086631No Hit
GACGCCGCGTCCAGCAGCTCTGCAGGTCAGT5610.10519407462966435No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5560.10425651603225201No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5530.10369398087380462No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5530.10369398087380462No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5530.10369398087380462No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)