FastQCFastQC Report
Sun 21 May 2023
EGAF00007924632

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924632
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences554568
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT43400.7825911339997981No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG24630.44412948457177476No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17340.3126758125243433No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16140.29103734798978664No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG14980.2701201656063819No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12950.2335150964354236No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT12930.23315445535984766No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC11810.21295855512759482No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT11730.21151599082529104No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC11700.21097502921192712No Hit
GAACGTACCACTGACGGTAAACTGGATCCGC11650.21007342652298727No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC10310.18591047445939904No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG9890.17833701187230422No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9050.16319008669811458No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC8210.14804316152392494No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG7960.14353514807922563No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA7770.14010905786125416No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7690.1386664935589504No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC7540.1359616854921308No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7520.13560104441655488No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7510.13542072387876689No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7350.13253559527415934No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7270.13109303097185557No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7270.13109303097185557No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7100.12802758182946006No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6690.1206344397801532No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6610.11919187547784942No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGT6450.11630674687324188No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6340.11432322095757419No Hit
GGTATGAACACCGCGAACACCGCTGGTACTT6060.10927424589951097No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6050.10909392536172301No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5910.10656943783269139No Hit
ACTCCGTCTGACGCAGGCGAAACGGTCGCGG5700.102782706539144No Hit
CTGGACACCAACTCCGTTTATGAACCGTACT5670.10224174492578007No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)