FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924634

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924634
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences530768
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44840.8448135531908479No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT40440.7619148102372411No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG22360.4212763391915112No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16550.31181231724595304No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15310.28844994423175474No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG14920.2811021011063214No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT12170.22929038676031713No Hit
GAACGTACCACTGACGGTAAACTGGATCCGC11770.2217541374008983No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC11210.21120338829771199No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10990.20705845115003163No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC10810.2036671389382932No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT10300.1940584210050342No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC9570.18030476592409492No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG9020.16994242305489404No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA7820.14733367497663763No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7640.14394236276489916No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7630.1437539565309137No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG7590.14300033159497183No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7440.14017423808518975No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7370.13885539444729147No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7270.13697133210743676No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC7070.13320320742772737No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7050.13282639495975643No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6560.1235944894944684No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6540.12321767702649745No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6460.1217104271546137No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGT6390.1203915835167154No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6360.11982636481475899No Hit
GGTATGAACACCGCGAACACCGCTGGTACTT5940.11191330298736925No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5900.11115967805142737No Hit
AGCATCGAAGCGCTGGCAACTCTGTCCGGTG5490.10343502245802311No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5470.10305820999005216No Hit
ACTCCGTCTGACGCAGGCGAAACGGTCGCGG5330.10042052271425556No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)