FastQCFastQC Report
Sun 21 May 2023
EGAF00007924636

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924636
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences554694
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT41390.7461771715576516No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG24640.44420887912975443No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17590.31711177694368425No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15530.27997418396449214No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG14950.26951796846549625No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT12830.23129869802089079No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12530.225890310693824No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC12030.2168763318153793No Hit
GAACGTACCACTGACGGTAAACTGGATCCGC11760.21200878322101915No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT11540.20804263251450347No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC11100.20011033110147214No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC10440.18821187898192518No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG10310.18586824447352954No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9650.17396979235398255No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8800.1586460282606266No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA8510.15341792051112865No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC8270.1490912106494752No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8200.14782925360649293No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC8160.14710813529621738No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7560.13629136064208375No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7210.12998157542717248No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7130.12853933880662133No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7050.12709710218607015No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGT6990.1260154247206568No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG6960.1254745859879501No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6920.12475346767767453No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6900.12439290852253675No Hit
GGTATGAACACCGCGAACACCGCTGGTACTT6650.1198859190833144No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6130.11051138104973192No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6110.11015082189459414No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6020.10852830569647409No Hit
ACTCCGTCTGACGCAGGCGAAACGGTCGCGG5850.10546355287780289No Hit
CTGGACACCAACTCCGTTTATGAACCGTACT5740.10348047752454506No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5720.10311991836940727No Hit
AGCATCGAAGCGCTGGCAACTCTGTCCGGTG5620.10131712259371835No Hit
ACCCAGGGCGAAGTAAACGTGACGGGTGTTA5560.10023544512830498No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)