FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924644

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924644
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences552996
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46550.8417782407106019No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18330.3314671353861511No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9920.1793864693415504No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7420.134178185737329No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7410.13399735260291215No Hit
ATGTCCAACATGGACATCGATGGTATTAACA7400.13381651946849524No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7390.13363568633407838No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)