FastQCFastQC Report
Sun 21 May 2023
EGAF00007924646

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924646
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences574612
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20530.357284567673491No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10270.178729299074854No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10170.17698899431268403No Hit
ATGTCCAACATGGACATCGATGGTATTAACA7710.13417749716330324No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7600.1322631619249163No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7530.13104494859139734No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7270.12652015620975546No Hit
GAAATGGAGAACATCCTGCAGAACCTGACTC5780.10058961525342318No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)