FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924654

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924654
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences571941
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT54090.9457269193850414No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA19610.3428675335392986No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15670.27397930905460527No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG12650.2211766598302972No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG11220.19617408089295926No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11010.19250237349656696No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC10450.1827111537728542No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA10390.1816620945167421No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA10260.1793891327951659No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9970.17431867972395754No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9960.17414383651460552No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9920.17344446367719746No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9800.17134634516497332No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9300.16260418469737264No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9290.1624293414880206No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8680.1517639057175478No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8570.14984063041467566No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT8150.14249721562189108No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8060.14092362673772293No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6770.1183688527313132No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6350.11102543793852862No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5720.10001031574935176No Hit

[OK]Adapter Content

Adapter graph